gen_household_matrices_mc_seir: Generate household matrices

In SC-COSMO/sccosmomcma: Stanford-CIDE COronavirus Simulation MOdel (SC-COSMO) for Mexico City Metropolitan Area Analysis

Description

gen_household_matrices_mc_seir generates transition matrices for within household epidemics.

Usage

gen_household_matrices_mc_seir(
  n_hhsize,
  n_hh_mod,
  v_names_states_hh,
  v_names_exp_hh,
  v_names_inf_hh,
  v_names_rec_hh,
  v_index_hh_sus,
  v_index_hh_exp,
  v_index_hh_inf,
  v_index_hh_rec,
  df_possibilities,
  r_sigma,
  r_gamma
)

Arguments

n_hhsize	Household size.
n_hh_mod	Number of household model states.
v_names_states_hh	Vector with names of household MC SEIR model.
v_names_exp_hh	Vector with names of exposed states.
v_names_inf_hh	Vector with names of infectious states.
v_index_hh_sus	Indexing column vector of susceptible.
v_index_hh_exp	Indexing column vector of exposed.
v_index_hh_inf	Indexing column vector of infectious.
v_index_hh_rec	Indexing column vector of recovered.
r_sigma	Daily rate of progression of exposed individuals (Latent period).
r_gamma	Daily rate of recovery of infectious individuals (Infectiousness period).
m_possibilities	Matrix with possible combinations of household.

Value

A list with three transition matrices: 1) community transmission matrix; 2) household transmission matrix; and 3) household recovered matrix.

SC-COSMO/sccosmomcma documentation built on Dec. 18, 2021, 11:56 a.m.