data-raw/equations_EsFl2020.R
In SCAR/solong: Allometric Equations for Southern Ocean Taxa
refs$EsFl2020 <- bibentry(bibtype = "Article", key = "EsFl2020",
author = c(person(c("P", "C"), "Escobar-Flores"),
person(c("R", "L"), "O'Driscoll"),
person(c("J", "C"), "Montgomery"),
person(c("Y"), "Ladroit"),
person(c("S"), "Jendersie")),
year = 2020,
title = "Estimates of density of mesopelagic fish in the Southern Ocean derived from bulk acoustic data collected by ships of opportunity",
journal = "Polar Biology", volume = 43, pages = "43-61",
doi = "10.1007/s00300-019-02611-3")
alleq_EsFl2020 <- function(id) {
switch(id,
"234631_WW~SL_EsFl2020" = list(taxon_name = "Bathylagus antarcticus",
taxon_aphia_id = 234631,
equation = function(SL) {
a <- 0.002581; b <- 3.500192;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"127286_WW~SL_EsFl2020" = list(taxon_name = "Cyclothone microdon",
taxon_aphia_id = 127286,
equation = function(SL) {
a <- 0.003510; b <- 2.840000;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125819_WW~SL_EsFl2020" = list(taxon_name = "Diaphus",
taxon_aphia_id = 125819,
equation = function(SL) {
a <- 0.006931; b <- 3.355468;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"126194_WW~SL_EsFl2020" = list(taxon_name = "Vinciguerria",
taxon_aphia_id = 126194,
equation = function(SL) {
a <- 0.009330; b <- 3.090000;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"217719_WW~SL_EsFl2020" = list(taxon_name = "Symbolophorus boops",
taxon_aphia_id = 217719,
equation = function(SL) {
a <- 0.007001; b <- 3.171734;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125832_WW~SL_EsFl2020" = list(taxon_name = "Protomyctophum",
taxon_aphia_id = 125832,
equation = function(SL) {
a <- 0.015400; b <- 3.048990
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"712788_WW~SL_EsFl2020" = list(taxon_name = "Pleuragramma antarctica",
taxon_aphia_id = 712788,
equation = function(SL) {
a <- 0.002462; b <- 3.408313
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"400296_WW~SL_EsFl2020" = list(taxon_name = "Photichthys argenteus",
taxon_aphia_id = 400296,
equation = function(SL) {
a <- 0.001737; b <- 3.278296
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"234695_WW~SL_EsFl2020" = list(taxon_name = "Notolepis coatsi",
taxon_aphia_id = 234695,
equation = function(SL) {
a <- 0.000261; b <- 3.556000
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"221503_WW~SL_EsFl2020" = list(taxon_name = "Nannobrachium achirus",
taxon_aphia_id = 221503,
equation = function(SL) {
a <- 0.010530; b <- 2.833630
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"274968_WW~SL_EsFl2020" = list(taxon_name = "Maurolicus australis",
taxon_aphia_id = 274968,
equation = function(SL) {
a <- 0.010863; b <- 3.182917;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"313344_WW~SL_EsFl2020" = list(taxon_name = "Lepidonotothen kempi",
taxon_aphia_id = 313344,
equation = function(SL) {
a <- 0.001351; b <- 3.679298
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125825_WW~SL_EsFl2020" = list(taxon_name = "Lampanyctus",
taxon_aphia_id = 125825,
equation = function(SL) {
a <- 0.019096; b <- 2.648692
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"217704_WW~SL_EsFl2020" = list(taxon_name = "Lampanyctodes hectoris",
taxon_aphia_id = 217704,
equation = function(SL) {
a <- 0.014696; b <- 2.922115
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"234641_WW~SL_EsFl2020" = list(taxon_name = "Krefftichthys anderssoni",
taxon_aphia_id = 234641,
equation = function(SL) {
a <- 0.009000; b <- 3.150000
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"205276_WW~SL_EsFl2020" = list(taxon_name = "Gymnoscopelus",
taxon_aphia_id = 205276,
equation = function(SL) {
a <- 0.008667; b <- 3.032538
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"206941_WW~SL_EsFl2020" = list(taxon_name = "Metelectrona",
taxon_aphia_id = 206941,
equation = function(SL) {
a <- 0.018277; b <- 2.854487
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
notes = "Used by the paper authors for species of the genus Electrona other than E. antarctica and E. carlsbergi, and Metelectrona sp.",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125821_WW~SL_EsFl2020" = list(taxon_name = "Electrona",
taxon_aphia_id = 125821,
equation = function(SL) {
a <- 0.018277; b <- 2.854487
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
notes = "Used by the paper authors for species of the genus Electrona other than E. antarctica and E. carlsbergi, and Metelectrona sp.",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"234638_WW~SL_EsFl2020" = list(taxon_name = "Electrona carlsbergi",
taxon_aphia_id = 234638,
equation = function(SL) {
a <- 0.017026; b <- 2.850658
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"217697_WW~SL_EsFl2020" = list(taxon_name = "Electrona antarctica",
taxon_aphia_id = 217697,
equation = function(SL) {
a <- 0.018277; b <- 2.854487
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
stop("unrecognized equation ID: ",id))
}
SCAR/solong documentation built on Aug. 5, 2022, 9:04 p.m.
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refs$EsFl2020 <- bibentry(bibtype = "Article", key = "EsFl2020",
author = c(person(c("P", "C"), "Escobar-Flores"),
person(c("R", "L"), "O'Driscoll"),
person(c("J", "C"), "Montgomery"),
person(c("Y"), "Ladroit"),
person(c("S"), "Jendersie")),
year = 2020,
title = "Estimates of density of mesopelagic fish in the Southern Ocean derived from bulk acoustic data collected by ships of opportunity",
journal = "Polar Biology", volume = 43, pages = "43-61",
doi = "10.1007/s00300-019-02611-3")
alleq_EsFl2020 <- function(id) {
switch(id,
"234631_WW~SL_EsFl2020" = list(taxon_name = "Bathylagus antarcticus",
taxon_aphia_id = 234631,
equation = function(SL) {
a <- 0.002581; b <- 3.500192;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"127286_WW~SL_EsFl2020" = list(taxon_name = "Cyclothone microdon",
taxon_aphia_id = 127286,
equation = function(SL) {
a <- 0.003510; b <- 2.840000;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125819_WW~SL_EsFl2020" = list(taxon_name = "Diaphus",
taxon_aphia_id = 125819,
equation = function(SL) {
a <- 0.006931; b <- 3.355468;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"126194_WW~SL_EsFl2020" = list(taxon_name = "Vinciguerria",
taxon_aphia_id = 126194,
equation = function(SL) {
a <- 0.009330; b <- 3.090000;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"217719_WW~SL_EsFl2020" = list(taxon_name = "Symbolophorus boops",
taxon_aphia_id = 217719,
equation = function(SL) {
a <- 0.007001; b <- 3.171734;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125832_WW~SL_EsFl2020" = list(taxon_name = "Protomyctophum",
taxon_aphia_id = 125832,
equation = function(SL) {
a <- 0.015400; b <- 3.048990
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"712788_WW~SL_EsFl2020" = list(taxon_name = "Pleuragramma antarctica",
taxon_aphia_id = 712788,
equation = function(SL) {
a <- 0.002462; b <- 3.408313
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"400296_WW~SL_EsFl2020" = list(taxon_name = "Photichthys argenteus",
taxon_aphia_id = 400296,
equation = function(SL) {
a <- 0.001737; b <- 3.278296
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"234695_WW~SL_EsFl2020" = list(taxon_name = "Notolepis coatsi",
taxon_aphia_id = 234695,
equation = function(SL) {
a <- 0.000261; b <- 3.556000
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"221503_WW~SL_EsFl2020" = list(taxon_name = "Nannobrachium achirus",
taxon_aphia_id = 221503,
equation = function(SL) {
a <- 0.010530; b <- 2.833630
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"274968_WW~SL_EsFl2020" = list(taxon_name = "Maurolicus australis",
taxon_aphia_id = 274968,
equation = function(SL) {
a <- 0.010863; b <- 3.182917;
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"313344_WW~SL_EsFl2020" = list(taxon_name = "Lepidonotothen kempi",
taxon_aphia_id = 313344,
equation = function(SL) {
a <- 0.001351; b <- 3.679298
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125825_WW~SL_EsFl2020" = list(taxon_name = "Lampanyctus",
taxon_aphia_id = 125825,
equation = function(SL) {
a <- 0.019096; b <- 2.648692
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"217704_WW~SL_EsFl2020" = list(taxon_name = "Lampanyctodes hectoris",
taxon_aphia_id = 217704,
equation = function(SL) {
a <- 0.014696; b <- 2.922115
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"234641_WW~SL_EsFl2020" = list(taxon_name = "Krefftichthys anderssoni",
taxon_aphia_id = 234641,
equation = function(SL) {
a <- 0.009000; b <- 3.150000
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"205276_WW~SL_EsFl2020" = list(taxon_name = "Gymnoscopelus",
taxon_aphia_id = 205276,
equation = function(SL) {
a <- 0.008667; b <- 3.032538
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"206941_WW~SL_EsFl2020" = list(taxon_name = "Metelectrona",
taxon_aphia_id = 206941,
equation = function(SL) {
a <- 0.018277; b <- 2.854487
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
notes = "Used by the paper authors for species of the genus Electrona other than E. antarctica and E. carlsbergi, and Metelectrona sp.",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"125821_WW~SL_EsFl2020" = list(taxon_name = "Electrona",
taxon_aphia_id = 125821,
equation = function(SL) {
a <- 0.018277; b <- 2.854487
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
notes = "Used by the paper authors for species of the genus Electrona other than E. antarctica and E. carlsbergi, and Metelectrona sp.",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"234638_WW~SL_EsFl2020" = list(taxon_name = "Electrona carlsbergi",
taxon_aphia_id = 234638,
equation = function(SL) {
a <- 0.017026; b <- 2.850658
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
"217697_WW~SL_EsFl2020" = list(taxon_name = "Electrona antarctica",
taxon_aphia_id = 217697,
equation = function(SL) {
a <- 0.018277; b <- 2.854487
tibble(allometric_value = a*(SL^b))
},
inputs = tibble(property = "standard length", units = "cm"),
return_property = "wet weight",
return_units = "g",
reliability = tribble(~type, ~value,
"Informal", "Equation was based on up to 20 individuals weighed to the nearest 1g"),
reference=refs$EsFl2020),
stop("unrecognized equation ID: ",id))
}
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