Man pages for SCBIT-YYLab/DysRegSig
Gene dysregulation analysis and construction of mechanistic signature in cancer
| ClinData | Example of clinical data |
| combineDysreg | Combine the dysregulations that are robustly associated with... |
| condiGRN | Build conditional GRN |
| DE | Example of DEGs input for function DysReg and DiffRegPlus |
| DiffCor | Differential correlation analysis |
| DiffCorPlus | Implement differential correlation analysis based on... |
| DysReg | Identify gene dysregulations |
| ExpData | Example of expression data |
| fitness.AUC | Calculate AUC in classifying data for using as fitness... |
| fitness.Cindex | Calculate C-Index within survival data for using as fitness... |
| plotDysregExp | Visualize expression pattern of a gene dysreglaiton between... |
| quantiReg | Quantify regulatory intensities of regulations |
| RankDysReg | Rank gene dysregulatins |
| RankDysTF | Rank TF with dysregulatin degree |
| tf2tar | TF-target regulations |
