checkConfig: Checks if shinycell config data.table contains any errors

In SGDDNB/ShinyCell: Shiny Interactive Web Apps for Single-Cell Data

Checks if shinycell config data.table contains any errors

Description

Checks if shinycell config data.table contains any errors. It is useful and reccomended to run this function if users have motified the shinycell config manually. Errors can include (i) levels in scConf does not match that in the Seurat/SingleCellExperiment object, (ii) number of levels does not match number of colours and (iii) specified colours are invalid colours.

Usage

checkConfig(scConf, obj)

Arguments

scConf	shinycell config data.table
obj	input single-cell object for Seurat (v3+) / SingleCellExperiment data or input file path for h5ad / loom files

Value

any potential error messages

Author(s)

John F. Ouyang

Examples

checkConfig(scConf, seu)

SGDDNB/ShinyCell documentation built on Jan. 25, 2024, 3:19 p.m.