makeShinyCodesMulti: Generate code files required for shiny app (multi datasets)

In SGDDNB/ShinyCell: Shiny Interactive Web Apps for Single-Cell Data

Generate code files required for shiny app (multi datasets)

Description

Generate code files required for shiny app containing multiple datasets. In particular, two R scripts will be generated, namely server.R and ui.R. Note that makeShinyFiles has to be ran prior to generate the necessary data files for each of the dataset to be included. The prefix used in makeShinyFiles have to be then supplied in this function.

Usage

makeShinyCodesMulti(
  shiny.title,
  shiny.footnotes,
  shiny.prefix,
  shiny.headers,
  shiny.dir,
  enableSubset = TRUE,
  defPtSiz = 1.25,
  ganalytics = NA
)

Arguments

shiny.title	specify the overall title for shiny app
shiny.footnotes	text for shiny app footnote. When given as a list, citation can be inserted by specifying author, title, journal, volume, page, year, doi, link. See example below.
shiny.prefix	specify file prefix for each dataset. Must match the prefix used in makeShinyFiles
shiny.headers	specify the tab header names for each dataset. Length must match that of shiny.prefix
shiny.dir	specify directory to create the shiny app in
enableSubset	specify whether to enable "Toggle to subset cells" functionality in the shiny app. Default is to enable this functionality
defPtSiz	specify default point size for single cells. For example, a smaller size can be used if you have many cells in your dataset. A single value can be specified to set the point size for all datasets. Otherwise, users have to specify one value for each dataset
ganalytics	Google analytics tracking ID (e.g. "UA-123456789-0")

Value

server.R and ui.R required for shiny app

Author(s)

John F. Ouyang

Examples

# Example citation
citation = list(
  author  = "Liu X., Ouyang J.F., Rossello F.J. et al.",
  title   = "",
  journal = "Nature",
  volume  = "586",
  page    = "101-107",
  year    = "2020", 
  doi     = "10.1038/s41586-020-2734-6",
  link    = "https://www.nature.com/articles/s41586-020-2734-6")
makeShinyCodes(shiny.title = "scRNA-seq shiny app", shiny.footnotes = "",
               shiny.prefix = c("sc1", "sc2"), defPtSiz = c(1.25, 1.5),
               shiny.headers = c("dataset1", "dataset2"),
               shiny.dir = "shinyApp/")
               

SGDDNB/ShinyCell documentation built on Jan. 25, 2024, 3:19 p.m.