makeShinyCodes: Generate code files required for shiny app (one dataset)

In SGDDNB/ShinyCell: Shiny Interactive Web Apps for Single-Cell Data

Generate code files required for shiny app (one dataset)

Description

Generate code files required for shiny app containing only one dataset. In particular, two R scripts will be generated, namely server.R and ui.R. If users want to include multiple dataset in one shiny app, please use makeShinyCodesMulti() instead. Note that both makeShinyFiles and makeShinyCodes functions are ran when running the wrapper function makeShinyApp.

Usage

makeShinyCodes(
  shiny.title,
  shiny.footnotes,
  shiny.prefix,
  shiny.dir,
  enableSubset = TRUE,
  defPtSiz = 1.25,
  ganalytics = NA
)

Arguments

shiny.title	title for shiny app
shiny.footnotes	text for shiny app footnote. When given as a list, citation can be inserted by specifying author, title, journal, volume, page, year, doi, link. See example below.
shiny.prefix	specify file prefix
shiny.dir	specify directory to create the shiny app in
enableSubset	specify whether to enable "Toggle to subset cells" functionality in the shiny app. Default is to enable this functionality
defPtSiz	specify default point size for single cells. For example, a smaller size can be used if you have many cells in your dataset
ganalytics	Google analytics tracking ID (e.g. "UA-123456789-0")

Value

server.R and ui.R required for shiny app

Author(s)

John F. Ouyang

Examples

# Example citation
citation = list(
  author  = "Liu X., Ouyang J.F., Rossello F.J. et al.",
  title   = "",
  journal = "Nature",
  volume  = "586",
  page    = "101-107",
  year    = "2020", 
  doi     = "10.1038/s41586-020-2734-6",
  link    = "https://www.nature.com/articles/s41586-020-2734-6")
makeShinyCodes(shiny.title = "scRNA-seq shiny app", shiny.footnotes = "",
               shiny.prefix = "sc1", shiny.dir = "shinyApp/")

SGDDNB/ShinyCell documentation built on July 17, 2025, 3:08 a.m.