pav_hist: pav_hist

In SJTU-CGM/vPanG: An R package to analyze and visualize PAV results from pan-genome of "map-to-pan" strategy.

Description

The genes can be divided into multiple types based on how many samples are shared. 'pav_hist()' integrate a ring chart and a histogram to showing the number of gene types.

Usage

pav_hist(
  pav_obj,
  show_ring = T,
  ring_pos_x = 0.5,
  ring_pos_y = 0.6,
  ring_r = 0.3,
  ring_label_size = NA,
  type_colors = NULL,
  x_title = "Sample Number",
  x_title_size = NULL,
  y_title = "Count",
  y_title_size = NULL,
  x_breaks = NULL,
  x_text_size = NULL,
  y_text_size = NULL
)

Arguments

pav_obj	A PAV object.
show_ring	A logical value indicating whether draw ring chart.
ring_pos_x	A numeric vector that specifies the x-location of the ring chart, ranging from 0 to 1.
ring_pos_y	A numeric vector that specifies the y-location of the ring chart, ranging from 0 to 1.
ring_r	The radius of the ring chart, ranging from 0 to 0.5.
type_colors	A named vector of colors for types. e.g. c("distributed" = "red")
x_title	The text for the x-axis title.
x_title_size	The size of x-axis title.
y_title	The text for the y-axis title.
y_title_size	The size of y-axis title.
x_breaks	A numeric vector of break values on the x-axis.
x_text_size	The size of tick labels on the x-axis.
y_text_size	The size of tick labels on the y-axis.
ring_labels_size	The size of labels on the ring chart.

SJTU-CGM/vPanG documentation built on Dec. 18, 2021, 11:59 a.m.