phen_bar: phen_bar

In SJTU-CGM/vPanG: An R package to analyze and visualize PAV results from pan-genome of "map-to-pan" strategy.

Description

Draw the presence/absence of a specified gene in a specified phenotype group in a barplot.

Usage

phen_bar(
  pav_obj,
  phen_name,
  gene_name,
  pav_colors = c("#F8766D", "#00BFC4"),
  bar_width = 0.8,
  x_text_size = NULL,
  x_title_size = NULL,
  y_text_size = NULL,
  y_title_size = NULL,
  legend_side = "top",
  legend_title_size = NULL,
  legend_text_size = NULL
)

Arguments

pav_obj	A PAV object.
phen_name	The name of phenotype.
gene_name	The name of gene. .
pav_colors	A vector of colors for presence and absence.
bar_width	A numeric vector giving the relative width of bars, ranging from 0 to 1.
x_text_size	The size of tick labels on x-axis.
x_title_size	The size of x-axis title.
y_text_size	The size of tick labels on y-axis.
y_title_size	The size of y-axis title.
legend_side	The position of legend.
legend_title_size	The size of legend title.
legend_text_size	The size of legend item labels.

SJTU-CGM/vPanG documentation built on Dec. 18, 2021, 11:59 a.m.