phen_stat: phen_stat
In SJTU-CGM/vPanG: An R package to analyze and visualize PAV results from pan-genome of "map-to-pan" strategy.
Description
Perform phenotypic association calculations
Usage
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phen_stat(
pav_obj,
phen_name,
p_adjust_method = "fdr",
pallel = F,
parallel_n = parallel::detectCores() - 1
)
Arguments
pav_obj
A PAV object.
phen_name
The name of phenotype used for calculation.
p_adjust_method
The adjustment methods, pass to p.adjust
pallel
A logical value indicating whether to use parallel computing.
parallel_n
The number of CPU cores used for parallel computing.
SJTU-CGM/vPanG documentation built on Dec. 18, 2021, 11:59 a.m.
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Description
Perform phenotypic association calculations
Usage
1 2 3 4 5 6 7 | phen_stat(
pav_obj,
phen_name,
p_adjust_method = "fdr",
pallel = F,
parallel_n = parallel::detectCores() - 1
)
|
Arguments
pav_obj |
A PAV object. |
phen_name |
The name of phenotype used for calculation. |
p_adjust_method |
The adjustment methods, pass to |
pallel |
A logical value indicating whether to use parallel computing. |
parallel_n |
The number of CPU cores used for parallel computing. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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