Files in SLINGhub/SLINGtools
Mass Spectrometry and Lipidomics Data Analysis in R
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/SLINGtools-package.R
R/coefvariation.R
R/midar-batchcorr.R
R/miqar-EDA.R
R/miqar-class.R
R/miqar-combine-datasets.R
R/miqar-output.R
R/miqar-plots_QC.R
R/miqar-processing.R
R/miqar-stats.R
R/read_metadata.R
R/read_msdata.R
R/utils-pipe.R
R/utils.R
README.md
SLINGtools.Rproj
_pkgdown.yml
inst/extdata/Testdata_Lipidomics_MHQuant_Detailed.csv
inst/extdata/Testdata_S1P_MHQuant_Detailed.csv
man/MidarExperiment-class.Rd
man/MidarExperiment.Rd
man/SLINGtools-package.Rd
man/batch_corr_center.Rd
man/calcQC.Rd
man/combine_experiments.Rd
man/cvlog.Rd
man/drift_corr_loess.Rd
man/exportWideCSV.Rd
man/figures/logo.svg
man/getDatasetFilteredQC.Rd
man/get_stats.Rd
man/import_MSOrganizerXLM.Rd
man/loadMSOrganizerXLM.Rd
man/loadMasshunterCSV.Rd
man/normalizeByISTD.Rd
man/pipe.Rd
man/plot_pca_qc.Rd
man/plot_responsecurves.Rd
man/plot_runscatter.Rd
man/quantitateByISTD.Rd
man/read_MRMkit_raw_area_CSV.Rd
man/read_MRMkit_results.Rd
man/read_MassHunterCSV.Rd
man/read_MassHunterCSV_wide.Rd
man/read_long_table_csv.Rd
man/read_table_wide.Rd
man/saveQCinfo.Rd
man/volcano_plot.Rd
man/writeReportXLS.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/.Rapp.history
tests/testthat/10_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM-NoQuantMsgSum.csv
tests/testthat/10_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM-NoQuantMsgSum.rds
tests/testthat/11_Testdata_MHQuant_DefaultSampleInfo-noAcqDataTime_RT-Areas-FWHM.csv
tests/testthat/11_Testdata_MHQuant_DefaultSampleInfo-noAcqDataTime_RT-Areas-FWHM.rds
tests/testthat/12_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM-withQuantMsg.csv
tests/testthat/13_Testdata_MHQuant_CompoundTable_DefaultSampleInfo_RT-Areas-FWHM.csv
tests/testthat/14_Testdata_MHQuant_Corrupt_RowAreaDeleted.csv
tests/testthat/15_Testdata_MHQuant_Corrupt_ExtraTopLine.csv
tests/testthat/15_Testdata_MHQuant_Corrupt_ExtraTopLine.rds
tests/testthat/16_Testdata_Lipidomics_flat_wide.csv
tests/testthat/17_Testdata_Lipidomics_GermanSystem.csv
tests/testthat/17_Testdata_Lipidomics_GermanSystem.rds
tests/testthat/18_Testdata_MHQuant_DefaultSampleInfo_AreaOnly_AMPM.csv
tests/testthat/18_Testdata_MHQuant_DefaultSampleInfo_AreaOnly_AMPM.rds
tests/testthat/1_Testdata_MHQuant_DefaultSampleInfo_AreaOnly.csv
tests/testthat/1_Testdata_MHQuant_DefaultSampleInfo_AreaOnly.rds
tests/testthat/20_MSTemplate_Creator_forTest.rds
tests/testthat/20_MSTemplate_Creator_forTest.xlsm
tests/testthat/21_MidarExperiment_1.rds
tests/testthat/21_Test_MH.csv
tests/testthat/2_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM.csv
tests/testthat/2_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM.rds
tests/testthat/3_Testdata_MHQuant_DefaultSampleInfo_DetailedResults-Area-flat.rds
tests/testthat/3_Testdata_MHQuant_DefaultSampleInfo_DetailedResults.csv
tests/testthat/3_Testdata_MHQuant_DefaultSampleInfo_DetailedResults.rds
tests/testthat/3_Testdata_MHQuant_DefaultSampleInfo_DetailedResults.rds-Areas-FWHM.rds
tests/testthat/4_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM_DetailedMethods.csv
tests/testthat/4_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM_DetailedMethods.rds
tests/testthat/5_Testdata_MHQuant_DetailedSampleInfo-RT-Areas-FWHM.csv
tests/testthat/5_Testdata_MHQuant_DetailedSampleInfo-RT-Areas-FWHM.rds
tests/testthat/6_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM-NoOutlierSum.csv
tests/testthat/6_Testdata_MHQuant_DefaultSampleInfo_RT-Areas-FWHM-NoOutlierSum.rds
tests/testthat/7_Testdata_MHQuant_NoOutlierSum-noQuantMsgSum.csv
tests/testthat/7_Testdata_MHQuant_NoOutlierSum-noQuantMsgSum.rds
tests/testthat/8_Testdata_MHQuant_Corrupt_OutlierQuantMsgSumDeleted.csv
tests/testthat/8_Testdata_MHQuant_Corrupt_OutlierQuantMsgSumDeleted.rds
tests/testthat/9_Testdata_MHQuant_withQuantMethods_withQualifierMethResults.csv
tests/testthat/9_Testdata_MHQuant_withQuantMethods_withQualifierMethResults.rds
tests/testthat/test-midarexperiment.R
tests/testthat/test-read_metadata.R
tests/testthat/test-read_msdata.R
tests/testthat/testthat-problems.rds
vignettes/.gitignore
vignettes/MiQAR.Rmd
vignettes/articles/MSTemplate_Creator_forTest.xlsm
vignettes/articles/MiQAR.Rmd
vignettes/articles/Test_MH.csv
vignettes/articles/tests.Rmd
vignettes/plot_illustration.Rmd
