API for SPRFMO/jjmr
Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model

Global functions
ParTable Source code
ProjTable Source code
Puntual_SSB_SD Source code
ac Source code
an Source code
anf Source code
bubbles Source code
check.zero Source code
checkExecutable Source code
checkGuess Source code
checkModels Source code
cleanad Source code
combineCatchFut Source code
combineConfig Source code
combineModels Man page Source code Source code
combineN Source code
combineR Source code
combineSSB Source code
combineSSBFut Source code
combineTotBiom Source code
compareMatrix Source code
compareTime Source code
createDataFrame Source code
diagnostics Man page Source code Source code
fit_absoluteResidualCatchByFleetFUN Source code
fit_ageFitsCatchFUN Source code
fit_ageFitsSurveyFUN Source code
fit_catchResidualsByFleetFUN Source code
fit_fAtAGeFUN Source code
fit_fProportionAtAGeFUN Source code
fit_fishedUnfishedBiomassFUN Source code
fit_fisheryMeanAgeFUN Source code
fit_fisheryMeanLengthFUN Source code
fit_lengthFitsCatchFUN Source code
fit_matureInmatureFishesFUN Source code
fit_nAtAGeFUN Source code
fit_nProportionAtAGeFUN Source code
fit_predictedObservedCatchesByFleetFUN Source code
fit_predictedObservedIndicesFUN Source code
fit_residualsCatchAtAgeByFleetFUN Source code
fit_residualsCatchAtLengthByFleetFUN Source code
fit_sdPerInputSeriesFUN Source code
fit_selectivityFisheryByPentadFUN Source code
fit_selectivitySurveyByPentadFUN Source code
fit_standardizedSurveyResidualsFUN Source code
fit_stockRecruitmentFUN Source code
fit_stockRecruitmentFUN2 Source code
fit_summarySheet2FUN Source code
fit_summarySheet3FUN Source code
fit_summarySheetFUN Source code
fit_surveyMeanAgeFUN Source code
fit_totalCatchByFleetFUN Source code
fit_totalCatchFUN Source code
fit_uncertaintyKeyParamsFUN Source code
funPlotKobe Source code
funPlotProj Source code
funPlotRatioSSB Source code
funPlotRatioSSB_F Source code
funPlotScen Source code
funPlotSeries Source code
funPlotTotProj Source code
getCtlFile Source code
getDatFile Source code
getInfo Source code
getJjmConfig Source code
getJjmCongif Source code
getModelName Source code
getOutFile Source code
getParFile Source code
getParameters Source code
getPath Source code
getPath2 Source code
getPath3 Source code
getRepFiles Source code
getResume Source code
getRetroData Source code
getYldFile Source code
ikeTable Source code
jjmR Man page
jjmR-package Man page
kobe Man page Source code
kobe1 Source code Source code
kobeFUN Source code
kobeFUN2 Source code
kobeFUN3 Source code
linesCI Source code
makeTransparent Source code
mutateMatrix Source code
my.panel.bands Source code
mygray Source code
normRetro Source code
nput_ageCompositionSurvey1FUN Source code
nput_ageCompositionSurvey2FUN Source code
nput_ageFleets2FUN Source code
nput_ageFleetsFUN Source code
nput_ageFleetsPlotsFUN Source code
nput_lengthComposition1FUN Source code
nput_lengthComposition2FUN Source code
nput_maturityPopulationFUN Source code
nput_weightAgeFUN Source code
nput_weightByCohortFleetFUN Source code
nput_weightByCohortSurveyFUN Source code
nput_weightFisheryFUN Source code
nput_weightPopulationFUN Source code
plot.bubbles Source code
plot.jjm.diag Source code
plot.jjm.output Source code
plot.jjm.retro Source code
plotDiag Source code
plotDiagVar Source code
plotRetro Source code
plotRetroByStock Source code
prepareCombine Source code
print.jjm.config Source code
print.jjm.diag Source code
print.jjm.output Source code
print.summary.jjm.config Source code
print.summary.jjm.diag Source code
print.summary.jjm.output Source code
projections_catchPredictionFUN Source code
projections_ssbPredictionFUN Source code
read.ctl Source code
read.ctlMS Source code
read.datEx Source code
readCtl Source code
readDat Source code
readExFiles Man page Source code
readJJM Man page Source code
readJJMConfig Man page Source code
readJJMConfig.default Source code
readJJMConfig.jjm.output Source code
readOutputsJJM Source code
readPar Source code
readYPR Source code
recDevFUN Source code
report Man page Source code
report.jjm.diag Source code
report.jjm.output Source code
reshapeJJM Source code
reshapeJJM2 Source code
reshapeJJM3 Source code
reshapeJJM4 Source code
reshapeJJM5 Source code
reshapeJJMCol Source code
resultCombined Source code
retro Man page Source code
runJJM Man page Source code Source code
runJJM.default Source code
runJJM.jjm.config Source code
runJJM.jjm.output Source code
runJJM2 Source code
runit Man page Source code
setOutputNames Source code
setParallelJJM Source code
sortRetro Source code Source code
sortRetroByStock Source code
splitPor Source code
summary.jjm.config Source code
summary.jjm.diag Source code
summary.jjm.output Source code
to Source code
toExpress Source code
toWrite Source code
toWrite.array Source code
toWrite.default Source code
toWrite.matrix Source code
versionJJM Source code
writeCombinedStocks Source code
writeFiles Source code
writeJJM Man page Source code Source code
writeJJM.jjm.output Source code
xtract Source code
ypr_yieldSsbPerRecruitFUN Source code
SPRFMO/jjmr documentation built on Sept. 22, 2018, 7:38 p.m.