API for SPRFMO/jjmr
Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model
| Global functions | |
|---|---|
| %>% | Man page |
| .LikeTable | Source code |
| .ParTable | Source code |
| .ProjTable | Source code |
| .Puntual_SSB_SD | Source code |
| .ac | Source code |
| .an | Source code |
| .anf | Source code |
| .bubbles | Source code |
| .checkExecutable | Source code |
| .checkGuess | Source code |
| .checkModels | Source code |
| .cleanad | Source code |
| .combineCatchFut | Source code |
| .combineConfig | Source code |
| .combineModels | Source code |
| .combineN | Source code |
| .combineR | Source code |
| .combineSSB | Source code |
| .combineSSBFut | Source code |
| .combineTotBiom | Source code |
| .compareMatrix | Source code |
| .compareTime | Source code |
| .createDataFrame | Source code |
| .diagnostics | Source code |
| .fit_absoluteResidualCatchByFleetFUN | Source code |
| .fit_ageFitsCatchFUN | Source code |
| .fit_ageFitsSurveyFUN | Source code |
| .fit_catchResidualsByFleetFUN | Source code |
| .fit_fAtAGeFUN | Source code |
| .fit_fProportionAtAGeFUN | Source code |
| .fit_fishedUnfishedBiomassFUN | Source code |
| .fit_fisheryMeanAgeFUN | Source code |
| .fit_fisheryMeanLengthFUN | Source code |
| .fit_lengthFitsCatchFUN | Source code |
| .fit_matureInmatureFishesFUN | Source code |
| .fit_nAtAGeFUN | Source code |
| .fit_nProportionAtAGeFUN | Source code |
| .fit_predictedObservedCatchesByFleetFUN | Source code |
| .fit_predictedObservedIndicesFUN | Source code |
| .fit_residualsCatchAtAgeByFleetFUN | Source code |
| .fit_residualsCatchAtLengthByFleetFUN | Source code |
| .fit_sdPerInputSeriesFUN | Source code |
| .fit_selectivityFisheryByPentadFUN | Source code |
| .fit_selectivitySurveyByPentadFUN | Source code |
| .fit_standardizedSurveyResidualsFUN | Source code |
| .fit_stockRecruitmentFUN | Source code |
| .fit_stockRecruitmentFUN2 | Source code |
| .fit_summarySheet2FUN | Source code |
| .fit_summarySheet3FUN | Source code |
| .fit_summarySheetFUN | Source code |
| .fit_surveyMeanAgeFUN | Source code |
| .fit_totalCatchByFleetFUN | Source code |
| .fit_totalCatchFUN | Source code |
| .fit_uncertaintyKeyParamsFUN | Source code |
| .funPlotKobe | Source code |
| .funPlotProj | Source code |
| .funPlotRatioSSB | Source code |
| .funPlotRatioSSB_F | Source code |
| .funPlotScen | Source code |
| .funPlotSeries | Source code |
| .funPlotTotProj | Source code |
| .getCtlFile | Source code |
| .getDatFile | Source code |
| .getInfo | Source code |
| .getJjmConfig | Source code |
| .getModelName | Source code |
| .getOutFile | Source code |
| .getParFile | Source code |
| .getParameters | Source code |
| .getPath | Source code |
| .getPath2 | Source code |
| .getPath3 | Source code |
| .getRepFiles | Source code |
| .getResume | Source code |
| .getRetroData | Source code |
| .getYldFile | Source code |
| .input_ageCompositionSurvey1FUN | Source code |
| .input_ageCompositionSurvey2FUN | Source code |
| .input_ageFleets2FUN | Source code |
| .input_ageFleetsFUN | Source code |
| .input_ageFleetsPlotsFUN | Source code |
| .input_lengthComposition1FUN | Source code |
| .input_lengthComposition2FUN | Source code |
| .input_maturityPopulationFUN | Source code |
| .input_weightAgeFUN | Source code |
| .input_weightByCohortFleetFUN | Source code |
| .input_weightByCohortSurveyFUN | Source code |
| .input_weightFisheryFUN | Source code |
| .input_weightPopulationFUN | Source code |
| .kobe1 | Source code |
| .kobeFUN | Source code |
| .kobeFUN2 | Source code |
| .kobeFUN3 | Source code |
| .mutateMatrix | Source code |
| .my.panel.bands | Source code |
| .mygray | Source code |
| .normRetro | Source code |
| .plot.bubbles | Source code |
| .plotDiag | Source code |
| .plotDiagVar | Source code |
| .plotRetro | Source code |
| .prepareCombine | Source code |
| .projections_catchPredictionFUN | Source code |
| .projections_ssbPredictionFUN | Source code |
| .read.ctl | Source code |
| .read.ctlMS | Source code |
| .read.datEx | Source code |
| .readCtl | Source code |
| .readDat | Source code |
| .readOutputsJJM | Source code |
| .readPar | Source code |
| .readYPR | Source code |
| .recDevFUN | Source code |
| .reshapeJJM | Source code |
| .reshapeJJM2 | Source code |
| .reshapeJJM3 | Source code |
| .reshapeJJM4 | Source code |
| .reshapeJJM5 | Source code |
| .reshapeJJMCol | Source code |
| .resultCombined | Source code |
| .runJJM | Source code |
| .runJJM2 | Source code |
| .setOutputNames | Source code |
| .setParallelJJM | Source code |
| .sortRetro | Source code |
| .sortRetroByStock | Source code |
| .splitPor | Source code |
| .to | Source code |
| .versionJJM | Source code |
| .writeCombinedStocks | Source code |
| .writeFiles | Source code |
| .writeJJM | Source code |
| .xtract | Source code |
| .ypr_yieldSsbPerRecruitFUN | Source code |
| changeNameModel | Man page Source code |
| check.zero | Source code |
| combineModels | Man page Source code |
| compareModels | Man page Source code |
| diagnostics | Man page Source code |
| fixed_bmsy | Man page Source code |
| get_age_fits | Man page Source code |
| get_catchabilities | Man page Source code |
| get_fishing_mortality | Man page Source code |
| get_index_fits | Man page Source code |
| get_len_fits | Man page Source code |
| get_msy_mt | Man page Source code |
| get_recruits | Man page Source code |
| get_selectivities | Man page Source code |
| get_totals | Man page Source code |
| geth | Man page Source code |
| getter | Man page Source code |
| jjmR | Man page |
| jjmR-package | Man page |
| kobe | Man page Source code |
| lower.saturation | Source code |
| makeTransparent | Source code |
| plot.jjm.diag | Source code |
| plot.jjm.output | Source code |
| plot.jjm.retro | Source code |
| plot_selectivities | Man page Source code |
| print.jjm.config | Source code |
| print.jjm.diag | Source code |
| print.jjm.output | Source code |
| print.summary.jjm.config | Source code |
| print.summary.jjm.diag | Source code |
| print.summary.jjm.output | Source code |
| readExFiles | Man page Source code |
| readJJM | Man page Source code |
| readJJMConfig | Man page Source code |
| readJJMConfig.default | Source code |
| readJJMConfig.jjm.output | Source code |
| report | Man page Source code |
| report.jjm.diag | Source code |
| report.jjm.output | Source code |
| retro | Man page Source code |
| runJJM | Man page Source code |
| runJJM.default | Source code |
| runJJM.jjm.config | Source code |
| runJJM.jjm.output | Source code |
| runit | Man page Source code |
| sortRetro | Source code |
| summary.jjm.config | Source code |
| summary.jjm.diag | Source code |
| summary.jjm.output | Source code |
| theme_jjm | Man page Source code |
| tidy_JJM | Man page Source code |
| toExpress | Source code |
| toWrite | Source code |
| toWrite.array | Source code |
| toWrite.default | Source code |
| toWrite.matrix | Source code |
| writeJJM | Man page Source code |
| writeJJM.jjm.output | Source code |
