runJJM: Run a JJM model

In SPRFMO/jjmr: Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model

Run a JJM model

Description

Function to run one or several JJM models

Usage

runJJM(
  models,
  path = NULL,
  output = "results",
  input = NULL,
  exec = NULL,
  version = NULL,
  useGuess = FALSE,
  guess = NULL,
  piner = NULL,
  iprint = 100,
  wait = TRUE,
  parallel = FALSE,
  temp = NULL,
  ...
)

Arguments

models	String with the name of the models to be run.
path	Directory where the 'admb' folder is located.
output	Folder to save the outputs, 'arc' by default.
input	Input
exec	Path to the jjm executable
version	version of JJM, default to "2015MS" (2015 SC multi-stock).
useGuess	boolean, to use an initial guess for the parameters?
guess	File with the initial guess for the parameters. If NULL, will use model.par in the output folder.
piner	A number to start the profiling on the meanlogrec
iprint	iprint parameter for the JJM model, 100 by default.
wait	boolean, wait for the model to finish? Forced to be TRUE.
parallel	Should model run in parallel? A cluster need to be setup to be used with foreach.
temp	character, path for a temporal directory to run models, if NULL a temporal folder is automaticaly created.
...	Arguments passed from system function.

Examples

## Not run: 
model = runJJM(models = "mod2.4")

## End(Not run)

SPRFMO/jjmr documentation built on March 27, 2024, 6:16 a.m.