runit: Fit, run, read and plot a JJM model

In SPRFMO/jjmr: Graphics and diagnostics tools for SPRFMO's Joint Jack Mackerel model

Fit, run, read and plot a JJM model

Description

Shortcut to fit, run, read and plot a JJM model

Usage

runit(
  mod,
  est = FALSE,
  exec = NULL,
  path = "config",
  input = "input",
  output = "results",
  version = "2015MS",
  pdf = FALSE,
  portrait = TRUE,
  ...
)

Arguments

mod	A character specifying the name of a model (by it's ctl filename).
est	Boolean, should we run the parameter estimation for a model?
exec	Path to the JJM executable file. By default, 'jjms' will be used.
path	Directory where the configuration files will be written.
input	Input
output	Folder to save the outputs, 'arc' by default.
version	version of JJM, default to "2015MS" (2015 SC multi-stock).
pdf	Produce outputs in a pdf file?
portrait	Orientation of the pdf output, default TRUE.

Examples

## Not run: 
writeJJM(mod1)

## End(Not run)

SPRFMO/jjmr documentation built on Oct. 10, 2024, 10:38 a.m.