Man pages for SRenan/PICS
Probabilistic inference of ChIP-seq
| bam2gr | Pre-process bam files |
| candidate.region | Identify candidate regions |
| makeGRangesOutput | Export a PICS object to GRanges |
| PICS | Estimation of binding site positions |
| pics-class | PICS class |
| picsError-class | picsError class |
| picsFDR | Estimate the FDR |
| pics-generics | Generics associated with pics classes |
| picsList-class | List of PICS objects |
| plot-FDR | Plot PICS FDR |
| plot-pics | Plot methods for PICS objects |
| segChrRead | Segmentation of paired-end sequencing data |
| segmentPICS | Segment the genome into candidate regions |
| segReads-class | Classes and functions to segment the genome in candidate... |
| segReadsGeneric | Perform genome segmentation depending |
| segReadsListPE-class | Class and methods for list of candidate regions from... |
| segReadsPE-class | Classe and methods for candidate regions from paired-end data |
| setParaEM | List of parameters for the EM algorithm that can be used as... |
| setParaPrior | List of parameters that can be used as an argument of PICS. |
| summarySeg | Summarize segmentList objects |
