plot-FDR: Plot PICS FDR

In SRenan/PICS: Probabilistic inference of ChIP-seq

Description

This method plots a curve showing the FDR as a function of the PICS scores.

Usage

## S4 method for signature 'picsList,picsList'
plot(x, y, filter = NULL, h = 0.1, ...)

Arguments

x	A picsList object as returned by the function PICS run on the treatment data.
y	A picsList object as returned by the function PICS run on the control data.
filter	A list of ranges for filtering regions based on PICS parameters. By default filter is set to 'NULL' and all regions are used.
h	A value between 0 and 1, representing the desired FDR. This simply draws a horizontal line at the given value.
...	Further graphical parameters passed to the generic function plot.

See Also

PICS

SRenan/PICS documentation built on Jan. 19, 2020, 5:59 a.m.