PICS: Estimation of binding site positions

Description Usage Arguments Value

View source: R/PICS.R

Description

This object contains Estimation of binding site positions and has the following slots: segReadsList, dataType.

Usage

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PICS(
  segReadsList,
  dataType = NULL,
  paraEM = NULL,
  paraPrior = NULL,
  nCores = 1
)

Arguments

segReadsList

This object contains segmentation of Genome

dataType

A character. The type of data you are processing: 'TF' for transcription factor.

paraEM

A list of parameters for the EM algorithm as returned by the setParaEM function. The default parameters should be good enough for most usages.

paraPrior

A list of parameters for the priors as returned by setParaPrior.

nCores

An integer. The number of cores that should be used in parallel by the function.

Value

An object of class picsList containing the estimated binding site positions.


SRenan/PICS documentation built on Jan. 19, 2020, 5:59 a.m.