plot-pics: Plot methods for PICS objects

Description Usage Arguments Functions

Description

Methods to plot pics and segReads objects and derived classes.

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
## S4 method for signature 'pics,segReads'
plot(
  x,
  y,
  addKernel = FALSE,
  addNucleosome = FALSE,
  addSe = TRUE,
  main = NULL,
  ...
)

## S4 method for signature 'picsError,segReads'
plot(x, y, addKernel = FALSE, main = NULL, ...)

## S4 method for signature 'picsList,segReadsList'
plot(
  x,
  y,
  regionIndex = NULL,
  addKernel = FALSE,
  addNucleosome = FALSE,
  addSe = TRUE,
  main = NULL,
  ...
)

Arguments

x, y

Objects

addKernel

Add kernel density estimate to the plot.

addNucleosome

Add a nucleosome track to the plot.

addSe

Add standard error to the plot.

main

Main title.

...

Arguments to be passed to the plot method.

regionIndex

Add region index to the plot.

Functions


SRenan/PICS documentation built on Jan. 19, 2020, 5:59 a.m.