API for SWittouck/tidygenomes
A Grammar of Genome Data Manipulation

Global functions
add_bedfiles Source code
add_exclusivity Man page Source code
add_gcd Man page Source code
add_genome_metadata Man page
add_gff_files Source code
add_orthogroup_measures Man page Source code
add_patterns Man page Source code
add_pcoa Source code
add_phylogroup_color Man page Source code
add_phylogroup_measures Man page Source code
add_phylogroups Man page
add_tidygenomes Man page
as_matrix Source code
as_tidygenomes Man page Source code
collapse_species Man page Source code
descendants Source code
expand_clade Source code
expand_clades Source code
filter_genomes Man page Source code
filter_orthogroups Man page Source code
genomes_n_loo_core_orthogroups Source code
genomes_n_um_orthogroups Source code
ggtree_augmented Man page Source code
heatmap Man page Source code
inflate_pangenome Man page
map_patterns Man page Source code
mrca Source code
pangenome_matrix Man page Source code
plot_genomes_per_species Source code
read_hmmer_domtbl Source code
read_pangenome Man page Source code
read_phylip_distmat Man page Source code
remove_phylogroups Man page
species_av_orthogroups Source code
tidygenomes Man page
tidygenomes-package Man page
update_genomes Man page Source code
upset_plot Man page Source code
SWittouck/tidygenomes documentation built on Sept. 10, 2019, 9:28 a.m.