read_phylip_distmat: Read a phylip formatted distance matrix

In SWittouck/tidygenomes: A Grammar of Genome Data Manipulation

Read a phylip formatted distance matrix

Description

This function reads a phylip formatted distance matrix, as generated by e.g. the EMBOSS tool distmat.

Usage

read_phylip_distmat(path, skip = 8, include_diagonal = T)

Arguments

path	Path to a phylip formatted distance matrix file
skip	Number of lines before the actual distance values start
include_diagonal	Should the diagonal of the distance matrix be included?

Details

The number of lines to skip can be different for different phylip distance matrix files.

For each row, the value of sequence_1 will be before the value of sequence_2 in sorting order.

Value

A tibble with the variables sequence_1, sequence_2 and distance

SWittouck/tidygenomes documentation built on Feb. 1, 2023, 9:50 p.m.