flip.data.frame: Check and flip the alleles of a data frame
In Sabor117/PathWAS: Creates predictive models of biological pathway functionality
View source: R/flip.data.frame.R
flip.data.frame R Documentation
Check and flip the alleles of a data frame
Description
Lower level function which takes an input data-frame with alleles from two separate genotypes
and then compares the alleles and flips them if necessary.
Usage
flip.data.frame(df)
Arguments
df
data frame. With 5 columns in order: rsID, a1, a0 (genotype to be checked), a1, a0 (genotype to be checked against)
Details
flip.data.frame is called within other major functions and is required for aligning the direction of
effects between two different datasets for performing a regression between them. The function (and the
other functions it calls) operates in two ways: first checking whether alleles a1/a0 in one dataset match
a1/a0 in the other. And then it switches the strand of the alleles being checked to make sure that these do
not mismatch with those on the other side either.
Sabor117/PathWAS documentation built on Nov. 29, 2024, 7:44 a.m.
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View source: R/flip.data.frame.R
| flip.data.frame | R Documentation |
Check and flip the alleles of a data frame
Description
Lower level function which takes an input data-frame with alleles from two separate genotypes and then compares the alleles and flips them if necessary.
Usage
flip.data.frame(df)
Arguments
df |
data frame. With 5 columns in order: rsID, a1, a0 (genotype to be checked), a1, a0 (genotype to be checked against) |
Details
flip.data.frame is called within other major functions and is required for aligning the direction of effects between two different datasets for performing a regression between them. The function (and the other functions it calls) operates in two ways: first checking whether alleles a1/a0 in one dataset match a1/a0 in the other. And then it switches the strand of the alleles being checked to make sure that these do not mismatch with those on the other side either.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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