probesToEntrez: probesToEntrez

Description Usage Arguments Value Note Author(s)

Description

aggregate probe level GEP to gene level (entrez id) GEP

Usage

1
probesToEntrez(Exp,Gpl,entrez="Entrez")

Arguments

Exp

a dataframe with log2_scaled GEP data values, samples in columns, genes in rows, rownames corresponding to Entrez IDs

Gpl

a dataframe giving the mapping between probes and Entrez gene Ids, probes correspond to rownames, Entrez Gene Ids are given in the column entrez

entrez

a character string, the name of the column of the Entrez Gene Ids

Value

a dataframe with GEP data - 1 row per entrez ID

Note

This is a contribution from the Tumor Identity Cards (CIT) program founded by the 'Ligue Nationale Contre le Cancer' (France): http://cit.ligue-cancer.net. For any question please contact CITR@ligue-cancer.net

Author(s)

Aurelien de Reynies


Sage-Bionetworks/CMSclassifier documentation built on May 9, 2019, 12:10 p.m.