readYeastGrower: Read Yeast Grower data files
In SamGG/cellGrowth: Fitting cell population growth models

Description Usage Arguments Value Author(s) See Also Examples

Read raw data file from Yeast Grower software

1	readYeastGrower(file)

file

filename

a list with entries:

`time`	a `numeric` vector of time points
`OD`	a `data.frame` vector of measured OD. The colnames are the well names.
`read`	a `numeric` vector of read numbers
`temperature`	a `numeric` vector of temperatures
`header`	a `character` vector: the header of the file

Julien Gagneur

readGenios

# Get file names
# Parse file
dat = readYeastGrower( system.file("extdata", "Plate1_YPFruc.txt", package="cellGrowth") )

# fit
n <- names( dat$OD)[36]
fit <- fitCellGrowth(x=dat$time,z=log2(dat$OD[[n]]), model = "locfit")
plot(fit)