gatherGenes: Annotate disease-related genes

In SandersKM/MendelianVariants:

Description

Takes the disease file and annotates each gene using NCBI Gene and Ensembl.

Usage

gatherGenes(disease_file)

Arguments

disease_file

The disease data frame returned from gatherDiseases(keyword)

Value

A data frame where each row is a gene. Includes information about phenotype, location, and exons.

Author(s)

Kate Sanders

References

https://www.ncbi.nlm.nih.gov/gene/ http://grch37.ensembl.org/biomart/martview/a751c8ace82f5c63091516237797a2fe

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as

diseases <- gatherDiseases("Kidney Disease")
genes <- gatherGenes(diseases)

SandersKM/MendelianVariants documentation built on May 12, 2019, 4:35 a.m.