Files in SaritaPoonia/unCTC
Characterising single circulating tumor cell transcriptomes
.RData
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/CNV_alterations.R
R/CreateSingleCellObject.R
R/DDLK_Clust.R
R/Gene_Violin_plots.R
R/GroupsDiffGenes.R
R/GroupsDiffPathways.R
R/PathwayEnrichmentScore.R
R/Stouffer_score.R
R/globals.R
R/unCTC_pathway_plots.R
README.Rmd
README.md
data/Blood_specific_gene.RData
data/Breast_elevated_genes.RData
data/Ding_et_al._WBC1_TPMData.RData
data/Ding_et_al._WBC1_metaData.RData
data/Poonia_et_al._CountData.RData
data/Poonia_et_al._PBMC_CountData.RData
data/Poonia_et_al._PBMC_TPMData.RData
data/Poonia_et_al._PBMC_metaData.RData
data/Poonia_et_al._TPMData.RData
data/Poonia_et_al._metaData.RData
data/c2.all.v7.2.symbols.RData
data/gencode_v19_gene_pos.RData
inst/DDLK_V2.py
man/Blood_specific_gene.Rd
man/Breast_elevated_genes.Rd
man/CNV_alterations.Rd
man/CreateSingleCellObject.Rd
man/DDLK_Clust.Rd
man/Data_integration.Rd
man/Differential_genes.Rd
man/Differential_pathways.Rd
man/Ding_et_al._WBC1_TPMData.Rd
man/Ding_et_al._WBC1_metaData.Rd
man/Gene_Violin_plots.Rd
man/GroupsDiffGenes.Rd
man/GroupsDiffPathways.Rd
man/Meta_data.Rd
man/PathwayEnrichmentScore.Rd
man/Poonia_et_al._CountData.Rd
man/Poonia_et_al._PBMC_CountData.Rd
man/Poonia_et_al._PBMC_TPMData.Rd
man/Poonia_et_al._PBMC_metaData.Rd
man/Poonia_et_al._TPMData.Rd
man/Poonia_et_al._metaData.Rd
man/Stouffer_score.Rd
man/c2.all.v7.2.symbols.Rd
man/data_filtering.Rd
man/figures/Breast-genes-Stouffer-1.png
man/figures/Canonical-markers-expression-1.png
man/figures/Counts-per-cluster-1.png
man/figures/Differential-gene-matrix-pheatmap-1.png
man/figures/Ebright_data_infercnv_head.png
man/figures/Immune-genes-Stouffer-1.png
man/figures/K_clustNo.png
man/figures/PCA_plots.png
man/figures/Poonia_data_infercnv_head.png
man/figures/Specific-Pathways-1.png
man/figures/Top10-Diff-Pathways-1.png
man/figures/infercnv_Ebright.png
man/figures/infercnv_poonia.png
man/figures/umap_plots.png
man/gencode_v19_gene_pos.Rd
man/get_Zscore.Rd
man/get_stouffer.Rd
man/unCTC_pathway_plots.Rd
tests/testthat.R
tests/testthat/test-CNV_alterations.R
unCTC.Rproj
vignettes/.gitignore
vignettes/Intro_to_unCTC.Rmd
