get_stouffer: Calculate Stouffer's score
In SaritaPoonia/unCTC: Characterising single circulating tumor cell transcriptomes

get_stouffer

R Documentation

Calculate Stouffer's score

Description

Stouffer's score computation

Usage

get_stouffer(data1, axis = 2)

Arguments

`data1`	z score matrix
`axis`	1 = applies over rows, 2 = applies over columns

Value

Stouffer's score

Examples

data = unCTC::Poonia_et_al._TPMData
Filtered_data = data_filtering(data_mat= data,
                               min_sample =5,
                               min_gene=1500)
#Filtere data normalizationand log transformtion
library(Linnorm)
data_norm = log1p(Linnorm.Norm(Filtered_data))
data_zscore = get_Zscore(data_norm)
StoufferScore = get_stouffer(data_zscore,axis=2)

SaritaPoonia/unCTC documentation built on Nov. 8, 2022, 12:07 p.m.