data_filtering: Filter out poor quality data

In SaritaPoonia/unCTC: Characterising single circulating tumor cell transcriptomes

Filter out poor quality data

Description

Filter out poor quality genes and cells

Usage

data_filtering(data_mat, min_sample = 5, min_gene = 1500)

Arguments

data_mat	Expression matrix, genes in row and cells in column
min_sample	gene filter, filter out genes which are not expressed in at least min_sample cells
min_gene	cell filter, filter out those cells which do not express at least min_gene genes

Value

Filtered_data return filtered data

Examples

data = unCTC::Poonia_et_al._TPMData
Filtered_data = data_filtering(data_mat= data,
                               min_sample =5,
                               min_gene=1500)

SaritaPoonia/unCTC documentation built on Nov. 8, 2022, 12:07 p.m.