get_Zscore: Claculate z-score of log transformed expression matrix
In SaritaPoonia/unCTC: Characterising single circulating tumor cell transcriptomes

get_Zscore

R Documentation

Claculate z-score of log transformed expression matrix

Description

Claculate Z score of matrix

Usage

get_Zscore(data_mat)

Arguments

data_mat

log transformed Expresion matrix, genes in row and cells in column

Value

data_z zscore matrix

Examples

data = unCTC::Poonia_et_al._TPMData
Filtered_data = data_filtering(data_mat= data,
                               min_sample =5,
                               min_gene=1500)
#Filtere data normalizationand log transformtion
library(Linnorm)
data_norm = log1p(Linnorm.Norm(Filtered_data))
data_zscore = get_Zscore(data_norm)

SaritaPoonia/unCTC documentation built on Nov. 8, 2022, 12:07 p.m.