Man pages for SaritaPoonia/unCTC
Characterising single circulating tumor cell transcriptomes
| Blood_specific_gene | Blood marker genes |
| Breast_elevated_genes | Genes evelevated in breast tissue |
| c2.all.v7.2.symbols | msidb c2 genesets |
| CNV_alterations | CNV in p and q arms of chromosome |
| CreateSingleCellObject | Create SingleCellExperiment instance |
| data_filtering | Filter out poor quality data |
| Data_integration | Integrate single cell expression matrices present in the list |
| DDLK_Clust | Cluster pathway mapped expression mtrix using Deep Dictionary... |
| Differential_genes | Calculate differential genes between cells/clusters. |
| Differential_pathways | Calculate differential pathways between cells/clusters. |
| Ding_et_al._WBC1_metaData | Ding et al. WBC1 metaData |
| Ding_et_al._WBC1_TPMData | Ding et al. WBC1 TPMData |
| gencode_v19_gene_pos | genes position file |
| Gene_Violin_plots | Gene Violin plot |
| get_stouffer | Calculate Stouffer's score |
| get_Zscore | Claculate z-score of log transformed expression matrix |
| GroupsDiffGenes | Claculate differential gene between two type of groups. |
| GroupsDiffPathways | Claculate differential pathways between two type of groups. |
| Meta_data | Meta Data computation |
| PathwayEnrichmentScore | Calculate Pathway enrichment score of all cells for all... |
| Poonia_et_al._CountData | Poonia et al. CountData |
| Poonia_et_al._metaData | Poonia et al. metaData |
| Poonia_et_al._PBMC_CountData | Poonia et al. WBC Count Data |
| Poonia_et_al._PBMC_metaData | Poonia et al. WBC metaData |
| Poonia_et_al._PBMC_TPMData | Poonia et al. PBMC TPMData |
| Poonia_et_al._TPMData | Poonia et al.TPM CTC Data |
| Stouffer_score | Calculate Stouffer's Score for specific list of genes and... |
| unCTC_pathway_plots | Pathway based principal component analysis plots |
