addKnownRNAmods: Add known RNA modifications nucleotide identity

In SchwartzLab/brainSTORM: brainSTORM. A package to process STORM-seq based data

Add known RNA modifications nucleotide identity

Description

Add the nucleotide identity based on a table with columns "pos" and "nuc establishing the position and nucleotide identity Useful to annotate already known RNA modifications. The function will add a column called "nuc" in the "RES" and "CALLS" tables.

Usage

addKnownRNAmods(STORM, RNAmods)

Arguments

STORM	STORM object
RNAmods	data.frame with two columns "pos" for the positions in the same format as the tables inside the STORM object as STORM$RES, a combination in the form of "gene:txcoor"; And "nuc" for the identity of the nucleotide on said position.

SchwartzLab/brainSTORM documentation built on May 14, 2022, 5:14 p.m.