add_scoreZ_3p: Add scoreZ accounting for read-ends (3prime)

In SchwartzLab/brainSTORM: brainSTORM. A package to process STORM-seq based data

Add scoreZ accounting for read-ends (3prime)

Description

Add scoreZ accounting for read-ends (3prime)

Usage

add_scoreZ_3p(
  STORM,
  group_A,
  newColName = "auto",
  onNucs = c("A", "C", "G", "T"),
  minMedCov = 30,
  flankSize = 6
)

Arguments

STORM	list. STORM object as output by storm_STORM
group_A	character. Name of group to be compared as found in STORM$META$group
newColName	character. Name of calculated metric to be stored in STORM$RES, assigned by default based on group_A and group_B
onNucs	character. Nucleotide(s) in which the metric will be calculated

SchwartzLab/brainSTORM documentation built on May 14, 2022, 5:14 p.m.