add_scoreA5p: Add ScoreA accounting for read-starts (5prime)

In SchwartzLab/brainSTORM: brainSTORM. A package to process STORM-seq based data

Add ScoreA accounting for read-starts (5prime)

Description

Add ScoreA accounting for read-starts (5prime)

Usage

add_scoreA5p(
  STORM,
  group_A,
  newColName = "auto",
  onNucs = c("A", "C", "G", "T"),
  minMedCov = 30,
  flankSize = 6
)

Arguments

STORM	list. STORM object as output by storm_STORM
group_A	character. Name of group to be compared as found in STORM$META$group
newColName	character. Name of calculated metric to be stored in STORM$RES, assigned by default based on group_A and group_B
onNucs	character. Nucleotide(s) in which the metric will be calculated
minMedCov	integer. Minimal median coverage of window around position, delimited by flankSize
flankSize	integer. Length of window to each side of position to consider for metric calculation

SchwartzLab/brainSTORM documentation built on May 14, 2022, 5:14 p.m.