Plot the output from biomass2tsb() or runPelfoss().
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 | plotPelfoss(
x,
biomassthr = 1,
NASCthr = 0.001,
NASCexp = 2,
NASCmax_size = 2,
biomCol = "blue",
biomAlpha = 0.1,
biomShape = 20,
biomSize = 2,
biomThr = 1,
trawlSize = 2,
stratumcol = NULL,
plot = c("biom", "nasc", "trawl", "super"),
daysOfSurvey = NULL,
timerange = NULL,
show = TRUE,
...
)
getTSB(x, unit = "mt", digits = 4)
getAllTSB(dir, run = "Run1", outfile = NULL, copy = TRUE)
plotPelfossAll(
dir,
run = "Run1",
NASCthr = 0.001,
NASCexp = 2,
NASCmax_size = 2,
biomassthr = 1,
biomCol = "blue",
biomAlpha = 0.1,
biomShape = 20,
biomSize = 2,
biomThr = 1,
trawlSize = 2,
stratumcol = NULL,
plot = c("biom", "nasc", "trawl", "super"),
daysOfSurvey = NULL,
timerange = NULL,
format = "png",
show = TRUE,
...
)
|
x |
The output from |
NASCthr |
A value below which NASC values are omitted when plotted as black dots with size proportional to NASC^NASCexp. |
NASCmax_size |
Maximum size of the NASC dots. |
biomCol |
The color of the biomass field. |
trawlSize |
The size to use for the red asteriks representing trawl stations. |
logColscale |
Logical: If TRUE, use 10 * log10 for the plotted biomass layers. |
firstcol |
The color to use for the first biomass level (the default, NA, omits plotting the first layer, which may include 0-values). |
biomassAlpha |
Transparency of the biomass layers. |
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