fitRA-methods: fit RA object

In Senbee/FLUSH_LVS_bundle: FLUSH.LVS.bundle

Description

This function fits a Residual-Array (RA) object from an object of class AffyBatch, using a robust linear model at the probe level.

Usage

## S4 method for signature 'AffyBatch'
fitRA(object,verbose=FALSE)

Arguments

object	on object of class AffyBatch
verbose	print some information. Default to FALSE

Value

An onbject of class RA containing:

data	a dataframe containing array effect estimates and residual variance
ProbeID	character. Probe ids

Author(s)

Stefano Calza

References

Stefano Calza, Wolfgang Raffelsberger, Alexander Ploner, Jose Sahel, Thierry Leveillard and Yudi Pawitan. Filtering genes to improve sensitivity in oligonucleotide microarray data analysis - 2007 NAR

See Also

RAplot, Flush, FlushSet, fitPLM

Examples

## Not run: 
data(choe)
choe.RA <- fitRA(choe)

## End(Not run)

Senbee/FLUSH_LVS_bundle documentation built on May 9, 2019, 1:21 p.m.