Files in SeojinHwang/scadsum
nonconvex penalty with summary statistics and a reference panel
.DS_Store
.Rbuildignore
.Rproj.user/BB476449/build_options
.Rproj.user/BB476449/console06/INDEX001
.Rproj.user/BB476449/cpp-complilation-config
.Rproj.user/BB476449/cpp-definition-cache
.Rproj.user/BB476449/rmd-outputs
.Rproj.user/BB476449/saved_source_markers
.Rproj.user/BB476449/sources/prop/1B780F49
.Rproj.user/BB476449/sources/prop/1C0F06D
.Rproj.user/BB476449/sources/prop/2D5E5316
.Rproj.user/BB476449/sources/prop/442D6184
.Rproj.user/BB476449/sources/prop/4B8C9792
.Rproj.user/BB476449/sources/prop/51258228
.Rproj.user/BB476449/sources/prop/5660FF8C
.Rproj.user/BB476449/sources/prop/60C4675E
.Rproj.user/BB476449/sources/prop/61C63C4A
.Rproj.user/BB476449/sources/prop/71D4F3FB
.Rproj.user/BB476449/sources/prop/78D3D0FF
.Rproj.user/BB476449/sources/prop/79B8A0BB
.Rproj.user/BB476449/sources/prop/7B85C827
.Rproj.user/BB476449/sources/prop/8060A7F5
.Rproj.user/BB476449/sources/prop/8C2B0F22
.Rproj.user/BB476449/sources/prop/90C5A534
.Rproj.user/BB476449/sources/prop/AFFB2C0B
.Rproj.user/BB476449/sources/prop/B360F20F
.Rproj.user/BB476449/sources/prop/B54E5123
.Rproj.user/BB476449/sources/prop/C53CAACD
.Rproj.user/BB476449/sources/prop/CAF409CD
.Rproj.user/BB476449/sources/prop/E194611B
.Rproj.user/BB476449/sources/prop/E27FE4E2
.Rproj.user/BB476449/sources/prop/E9E4F0A2
.Rproj.user/BB476449/sources/prop/F24427E
.Rproj.user/BB476449/sources/prop/F3CE1D17
.Rproj.user/BB476449/sources/prop/F40BF64
.Rproj.user/BB476449/sources/prop/FB0D1734
.Rproj.user/BB476449/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
.travis.yml
DESCRIPTION
FeatureRequests.md
LICENSE
NAMESPACE
R/.DS_Store
R/RcppExports.R
R/comp.ss.bim.R
R/elnetR.R
R/group.blocks.R
R/indeplasso.R
R/lassosum.R
R/lassosum.pipeline.R
R/lassosumR.R
R/logical.vector.R
R/matchpos.R
R/mcpR.R
R/mcpsum.R
R/mcpsum.pipeline.R
R/mcpsumR.R
R/merge.lassosum.R
R/merge.lassosum.pipeline.R
R/ncol.bfile.R
R/not.a.file.R
R/nrow.bfile.R
R/p2cor.R
R/package_scadsum.R
R/parse.pheno.covar.R
R/parseargs.R
R/parseblocks.R
R/parseselect.R
R/pgs.R
R/pgs.default.R
R/pgs.vec.R
R/plot.validate.lassosum.R
R/pseudovalidate.R
R/pseudovalidate.lassosum.pipeline.R
R/pseudovalidation.R
R/pseudovalidationR.R
R/read.table2.R
R/readbfile.R
R/ridgeR.R
R/ridgesum.R
R/ridgesum.pipeline.R
R/ridgesumR.R
R/scadR.R
R/scadsum.R
R/scadsum.pipeline.R
R/scadsumR.R
R/sd.bfile.R
R/selectregion.R
R/splitgenome.R
R/splitvalidate.R
R/splitvalidate.lassosum.pipeline.R
R/splitvec.from.bfile.R
R/subset.lassosum.pipeline.R
R/validate.R
R/validate.lassosum.pipeline.R
R/write.table2.R
README.md
changelog.md
inst/data/.Rhistory
inst/data/Berisa.AFR.hg19.bed
inst/data/Berisa.AFR.hg38.bed
inst/data/Berisa.ASN.hg19.bed
inst/data/Berisa.ASN.hg38.bed
inst/data/Berisa.EUR.hg19.bed
inst/data/Berisa.EUR.hg38.bed
inst/data/Berisa.R
inst/data/Berisa.README
inst/data/GenerateData.R
inst/data/refpanel.bed
inst/data/refpanel.bim
inst/data/refpanel.fam
inst/data/summarystats.txt
inst/data/testsample.bed
inst/data/testsample.bim
inst/data/testsample.covar.txt
inst/data/testsample.fam
inst/data/testsample.pheno.txt
inst/include/.Rhistory
inst/include/scadsum.h
inst/include/scadsum_RcppExports.h
inst/lassosum.R
inst/scadsum.R
man/comp.ss.bim.Rd
man/countlines.Rd
man/elnet.Rd
man/elnetR.Rd
man/genotypeMatrix.Rd
man/group.blocks.Rd
man/indeplasso.Rd
man/lassosum.Rd
man/lassosum.pipeline.Rd
man/lassosumR.Rd
man/logical.vector.Rd
man/matchpos.Rd
man/mcp.Rd
man/mcpR.Rd
man/mcpsum.Rd
man/mcpsum.pipeline.Rd
man/mcpsumR.Rd
man/merge.lassosum.Rd
man/merge.lassosum.pipeline.Rd
man/multiBed3.Rd
man/multiBed3sp.Rd
man/ncol.bfile.Rd
man/normalize.Rd
man/not.a.file.Rd
man/nrow.bfile.Rd
man/p2cor.Rd
man/parseargs.Rd
man/parseselect.Rd
man/pgs.Rd
man/pgs.vec.Rd
man/plot.validate.lassosum.Rd
man/pseudovalidate.Rd
man/pseudovalidation.Rd
man/pseudovalidationR.Rd
man/read.table2.Rd
man/readbfile.Rd
man/ridge.Rd
man/ridgeR.Rd
man/ridgesum.Rd
man/ridgesum.pipeline.Rd
man/ridgesumR.Rd
man/runElnet.Rd
man/runMcp.Rd
man/runRidge.Rd
man/runScad.Rd
man/scad.Rd
man/scadR.Rd
man/scadsum.Rd
man/scadsum.pipeline.Rd
man/scadsumR.Rd
man/sd.bfile.Rd
man/selectregion.Rd
man/splitgenome.Rd
man/splitvalidate.Rd
man/splitvec.from.bfile.Rd
man/subset.lassosum.pipeline.Rd
man/validate.Rd
scadsum.Rproj
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/functions.cpp
src/functions.o
src/scadsum.so
tests/cp.lassosum.list.test.R
tests/cp.meta.test.R
tests/cvtests.R
tests/test.lassosum.pipeline.R
tests/test.standalone.R
tests/testthat.R
tests/testthat/test.bed
tests/testthat/test.bim
tests/testthat/test.elnet.R
tests/testthat/test.fam
tests/testthat/test.lassosum.R
tests/testthat/test.lassosumR.R
tests/testthat/test.lincom.multiBed3.R
tests/testthat/test.runElnet.R
