readbfile: read a PLINK bfile file into a matrix
In SeojinHwang/scadsum: nonconvex penalty with summary statistics and a reference panel

readbfile

R Documentation

read a PLINK bfile file into a matrix

read a PLINK bfile file into a matrix

readbfile(
  bfile,
  keep = NULL,
  extract = NULL,
  exclude = NULL,
  remove = NULL,
  chr = NULL,
  fillmissing = F
)

`bfile`	PLINK bfile (as character, without the .bed extension)
`keep`	samples to keep
`extract`	SNPs to extract
`exclude`	SNPs to exclude
`remove`	samples to remove
`chr`	a vector of chromosomes
`fillmissing`	Whether to fill missing values with 0

A genotype matrix of 0,1, and 2 (possibly with NaNs)

SeojinHwang/scadsum documentation built on June 30, 2023, 10:52 p.m.

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