runMcp: sj0717 Runs mcp with various parameters

In SeojinHwang/scadsum: nonconvex penalty with summary statistics and a reference panel

sj0717 Runs mcp with various parameters

Description

sj0717 Runs mcp with various parameters

Usage

runMcp(
  lambda,
  shrink,
  gamma,
  fileName,
  r,
  N,
  P,
  col_skip_pos,
  col_skip,
  keepbytes,
  keepoffset,
  thr,
  x,
  trace,
  maxiter,
  startvec,
  endvec
)

Arguments

gamma
fileName	the file name of the reference panel
r	a vector of correlations
N	number of subjects
P	number of position in reference file
thr	threshold
x	a numeric vector of beta coefficients
trace	if >1 displays the current iteration
maxiter	maximal number of iterations
lambda1	a vector of lambdas (lambda2 is 0)
col_skip_posR	which variants should we skip
col_skipR	which variants should we skip
keepbytesR	required to read the PLINK file
keepoffsetR	required to read the PLINK file
Constant	a constant to multiply the standardized genotype matrix

Value

a list of results

SeojinHwang/scadsum documentation built on June 30, 2023, 10:52 p.m.