cpgi.anno: generate CpG islands GRangesList object
In ShengLi/edmr: Empirical Differentially Methylated Regions Calculation
Description
Usage
Arguments
Examples
Description
generate CpG islands GRangesList object
Usage
1
Arguments
file
bed file for CpG islands
shore.width
width for CpG shores
shelf.width
width for CpG shelves
Examples
1
2
3
4
library(GenomicRanges)
library(IRanges)
cpgi.file=system.file("extdata", "chr22.hg19_cpgisland_all.bed.gz", package = "edmr")
cpgi=cpgi.anno(file=cpgi.file)
ShengLi/edmr documentation built on Sept. 17, 2021, 3:38 a.m.
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Description Usage Arguments Examples
Description
generate CpG islands GRangesList object
Usage
1 |
Arguments
file |
bed file for CpG islands |
shore.width |
width for CpG shores |
shelf.width |
width for CpG shelves |
Examples
1 2 3 4 | library(GenomicRanges)
library(IRanges)
cpgi.file=system.file("extdata", "chr22.hg19_cpgisland_all.bed.gz", package = "edmr")
cpgi=cpgi.anno(file=cpgi.file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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