filter.dmr: significant DMRs

In ShengLi/edmr: Empirical Differentially Methylated Regions Calculation

Description

significant DMRs

Usage

filter.dmr(myDMR, DMR.qvalue = 0.001, mean.meth.diff = 20, num.CpGs = 5,
  num.DMCs = 3)

Arguments

myDMR	a GRanges object for DMR regions called.
DMR.qvalue	qvalue cutoff for DMC definition, default: 0.001
mean.meth.diff	cutoff of the DMR mean methylation difference, default=20
num.CpGs	cutoff of the number CpGs in each region to call DMR, default: 5
num.DMCs	cutoff of the number of DMCs, default: 3

See Also

edmr

ShengLi/edmr documentation built on Sept. 17, 2021, 3:38 a.m.