filter.dmr: significant DMRs

Description Usage Arguments See Also

View source: R/filter.dmr.R

Description

significant DMRs

Usage

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filter.dmr(myDMR, DMR.qvalue = 0.001, mean.meth.diff = 20, num.CpGs = 5,
  num.DMCs = 3)

Arguments

myDMR

a GRanges object for DMR regions called.

DMR.qvalue

qvalue cutoff for DMC definition, default: 0.001

mean.meth.diff

cutoff of the DMR mean methylation difference, default=20

num.CpGs

cutoff of the number CpGs in each region to call DMR, default: 5

num.DMCs

cutoff of the number of DMCs, default: 3

See Also

edmr


ShengLi/edmr documentation built on Sept. 17, 2021, 3:38 a.m.