MAF-class: Class MAF

In ShixiangWang/sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations

Class MAF

Description

S4 class for storing summarized MAF. It is from maftools package.

Details

More about MAF object please see maftools.

Slots

data

data.table of MAF file containing all non-synonymous variants.

variants.per.sample

table containing variants per sample

variant.type.summary

table containing variant types per sample

variant.classification.summary

table containing variant classification per sample

gene.summary

table containing variant classification per gene

summary

table with basic MAF summary stats

maf.silent

subset of main MAF containing only silent variants

clinical.data

clinical data associated with each sample/Tumor_Sample_Barcode in MAF.

ShixiangWang/sigminer documentation built on March 16, 2024, 12:30 p.m.