get_bayesian_result: Get Specified Bayesian NMF Result from Run
In ShixiangWang/sigminer: Extract, Analyze and Visualize Mutational Signatures for Genomic Variations
View source: R/get_bayesian_result.R
get_bayesian_result R Documentation
Get Specified Bayesian NMF Result from Run
Description
Sometimes, we may want to use or inspect specified run result from sig_auto_extract.
This function is designed for this purpose.
Usage
get_bayesian_result(run_info)
Arguments
run_info
a data.frame with 1 row and two necessary columns Run and file.
Value
a list.
Author(s)
Shixiang Wang
Examples
load(system.file("extdata", "toy_copynumber_tally_W.RData",
package = "sigminer", mustWork = TRUE
))
res <- sig_auto_extract(cn_tally_W$nmf_matrix, result_prefix = "Test_copynumber", nrun = 1)
# All run info are stored in res$Raw$summary_run
# Obtain result of run 1
res_run1 <- get_bayesian_result(res$Raw$summary_run[1, ])
ShixiangWang/sigminer documentation built on March 16, 2024, 12:30 p.m.
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View source: R/get_bayesian_result.R
| get_bayesian_result | R Documentation |
Get Specified Bayesian NMF Result from Run
Description
Sometimes, we may want to use or inspect specified run result from sig_auto_extract. This function is designed for this purpose.
Usage
get_bayesian_result(run_info)
Arguments
run_info |
a |
Value
a list.
Author(s)
Shixiang Wang
Examples
load(system.file("extdata", "toy_copynumber_tally_W.RData",
package = "sigminer", mustWork = TRUE
))
res <- sig_auto_extract(cn_tally_W$nmf_matrix, result_prefix = "Test_copynumber", nrun = 1)
# All run info are stored in res$Raw$summary_run
# Obtain result of run 1
res_run1 <- get_bayesian_result(res$Raw$summary_run[1, ])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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