future_sim: future simulation for Surume-Ika

In ShotaNishijima/messir: Management and Evaluation for Sustainability of Surume-Ika (Japanese flying squid) with R)

Description

future simulation for Surume-Ika

Usage

future_sim(
  assess_data,
  Fcurrent,
  multi = 1,
  sim_year = 50,
  nsim = 1000,
  Fcurrent_year = NULL,
  SR = "HS",
  rec_arg = list(a = NULL, b = NULL, sd = 0, rho = 0, resampled_resid = NULL,
    resid_for_bias_correction = NULL),
  bias_correct = TRUE,
  weight,
  num_to_mass_scale = 1/1000,
  M = 0.6,
  Pope = TRUE,
  seed = 12345,
  HCR = FALSE,
  SBrefs = c("SBlimit", "SBban"),
  Ftarget = NULL,
  array_to_tibble = FALSE,
  sim_rec_resid = NULL,
  scenario_name = NULL,
  use_Catch_est = FALSE,
  rec_resid_resample = FALSE,
  backward_resample = FALSE,
  backward_block_duration = 5
)

Arguments

assess_data	assessment data
Fcurrent	current fishing mortality coefficient
sim_rec_resid	matrix of sim_year x nsim, DON'T forget to accont for bias-corrected mean
use_Catch_est	whether using catch biomass estimated by samuika
backward_resample	whether using backward resampling
backward_block_duration	duration of block of backward resampling (default: 5 years)
use_resid_resample	nonperametric resampling of rec_arg$resampled resid

ShotaNishijima/messir documentation built on April 2, 2020, 2:58 a.m.