Bowtie_CLI: Constructor method for Bowtie_CLI

Usage Arguments

Usage

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Bowtie_CLI(inFilePath, inFileNames, cliParams, outputFlag, outFilePath,
  bowtieIndexFilePath, matepairFileNames, addNHTag, outputPipeString,
  outputFormat)

Arguments

inFilePath

(inFileNames may also be specified otherwise they will be fetched by list.files)


SimonSchafferer/CLIHelperPackage documentation built on May 9, 2019, 1:32 p.m.