generateCommandResult-method: Generates the commands and possibly resulting files/folders

In SimonSchafferer/CLIHelperPackage: A packages that manages easy access to cmdLine applications within R (related to RNA-Seq)

Usage

generateCommandResult(object)

## S4 method for signature 'Cutadapt_CLI'
generateCommandResult(object)

## S4 method for signature 'HTSeqCount_CLI'
generateCommandResult(object)

## S4 method for signature 'IntersectBed_CLI'
generateCommandResult(object)

## S4 method for signature 'MergeBedFile_CLI'
generateCommandResult(object)

## S4 method for signature 'MultiBamCov_CLI'
generateCommandResult(object)

## S4 method for signature 'Genomecov_CLI'
generateCommandResult(object)

## S4 method for signature 'Samtools_CLI'
generateCommandResult(object)

## S4 method for signature 'BamToBed_CLI'
generateCommandResult(object)

## S4 method for signature 'SortFile_CLI'
generateCommandResult(object)

## S4 method for signature 'Bowtie2_CLI'
generateCommandResult(object)

## S4 method for signature 'Bowtie2TophatIon_CLI'
generateCommandResult(object)

## S4 method for signature 'Tophat2_CLI'
generateCommandResult(object)

## S4 method for signature 'Bowtie_CLI'
generateCommandResult(object)

## S4 method for signature 'MultiIntersectBed_CLI'
generateCommandResult(object)

## S4 method for signature 'MultiIntersectBed_perl_CLI'
generateCommandResult(object)

## S4 method for signature 'RNAStar_CLI'
generateCommandResult(object)

Value

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

CmdGenResult

SimonSchafferer/CLIHelperPackage documentation built on May 9, 2019, 1:32 p.m.