plot_bulk_pi: Plot the estimated proportions of US counts in each group -...
In SimoneTiberi/DifferentialRegulation: Differentially regulated genes from scRNA-seq data
plot_bulk_pi R Documentation
Plot the estimated proportions of US counts in each group - bulk RNA-seq data
Description
plot_bulk_pi plots the posterior means of the proportions of US counts, in each group.
If 'CI' is TRUE, a profile Wald type confidence interval will also be added;
the level of the confidence interval is specified by 'CI_level'.
Usage
plot_bulk_pi(results, transcript_id, CI = TRUE, CI_level = 0.95)
Arguments
results
a list of data.frame objects,
computed via DifferentialRegulation.
transcript_id
a character, indicating the transcript to plot.
CI
a logical ('TRUE' by default), indicating whether to plot a
profile Wald type confidence interval around the estimated proportions.
CI_level
a numeric between 0 and 1, indicating the level of the confidence interval.
Value
A ggplot object.
Author(s)
Simone Tiberi simone.tiberi@unibo.it
See Also
DifferentialRegulation_bulk
Examples
# see the example of DifferentialRegulation_bulk function:
help(DifferentialRegulation_bulk)
SimoneTiberi/DifferentialRegulation documentation built on Feb. 5, 2024, 8:48 a.m.
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| plot_bulk_pi | R Documentation |
Plot the estimated proportions of US counts in each group - bulk RNA-seq data
Description
plot_bulk_pi plots the posterior means of the proportions of US counts, in each group.
If 'CI' is TRUE, a profile Wald type confidence interval will also be added;
the level of the confidence interval is specified by 'CI_level'.
Usage
plot_bulk_pi(results, transcript_id, CI = TRUE, CI_level = 0.95)
Arguments
results |
a |
transcript_id |
a character, indicating the transcript to plot. |
CI |
a logical ('TRUE' by default), indicating whether to plot a profile Wald type confidence interval around the estimated proportions. |
CI_level |
a numeric between 0 and 1, indicating the level of the confidence interval. |
Value
A ggplot object.
Author(s)
Simone Tiberi simone.tiberi@unibo.it
See Also
DifferentialRegulation_bulk
Examples
# see the example of DifferentialRegulation_bulk function:
help(DifferentialRegulation_bulk)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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