Files in SinomeM/CNVgears
A Framework to Combine, Analize and Interpret CNVs Calling Results
DESCRIPTION
NAMESPACE
NEWS.md
R/CNVRs_creation.R
R/CNVgears-package.R
R/CNVs_inheritance.R
R/GRanges_from_to.R
R/chr_st_end_centr_arms.R
R/chr_uniform.R
R/cnmops_to_CNVresults.R
R/cohort_examples.R
R/filter_calls.R
R/genic_load_annotation.R
R/hg18_chr_arm.R
R/hg18_chr_st_en_centr.R
R/hg19_chr_arm.R
R/hg19_chr_st_en_centr.R
R/hg38_chr_arm.R
R/hg38_chr_st_en_centr.R
R/immuno_regions.R
R/inter_results_compare_merge.R
R/internal_funtions.R
R/intra_results_merging.R
R/locus_annotator.R
R/lrr_trio_plot.R
R/markers_example.R
R/penn_22.R
R/quanti_22.R
R/read_NGS_intervals.R
R/read_NGS_raw.R
R/read_VCF.R
R/read_final_report_raw.R
R/read_final_report_snps.R
R/read_metadt.R
R/read_results.R
R/summary_stats.R
R/telom_centrom.R
README.md
data/cohort_examples.rda
data/hg18_chr_arms.rda
data/hg18_start_end_centromeres.rda
data/hg19_chr_arms.rda
data/hg19_start_end_centromeres.rda
data/hg38_chr_arms.rda
data/hg38_start_end_centromeres.rda
data/markers_examples.rda
data/penn_22.rda
data/quanti_22.rda
inst/CITATION
inst/extdata/Final_report_exampleNA12878.txt
inst/extdata/SNP.pfb
inst/extdata/VCF_res_example.vcf
inst/extdata/chrs_14_22_cnvs_ipn.txt
inst/extdata/chrs_14_22_cnvs_penn.txt
inst/extdata/chrs_14_22_cnvs_quanti.txt
inst/extdata/cohort.ped
inst/extdata/markers_WES_example.tsv
man/CNVgears.Rd
man/CNVresults_to_GRanges.Rd
man/chr_uniform.Rd
man/cleaning_filter.Rd
man/cnmops_to_CNVresults.Rd
man/cnvrs_create.Rd
man/cnvs_inheritance.Rd
man/cohort_examples.Rd
man/genic_load.Rd
man/genomic_locus.Rd
man/hg18_chr_arms.Rd
man/hg18_start_end_centromeres.Rd
man/hg19_chr_arms.Rd
man/hg19_start_end_centromeres.Rd
man/hg38_chr_arms.Rd
man/hg38_start_end_centromeres.Rd
man/immuno_regions.Rd
man/inter_res_merge.Rd
man/lrr_trio_plot.Rd
man/markers_examples.Rd
man/merge_calls.Rd
man/penn_22.Rd
man/quanti_22.Rd
man/read_NGS_intervals.Rd
man/read_NGS_raw.Rd
man/read_finalreport_raw.Rd
man/read_finalreport_snps.Rd
man/read_metadt.Rd
man/read_results.Rd
man/read_vcf.Rd
man/summary.CNVresults.Rd
man/telom_centrom.Rd
tests/testthat.R
tests/testthat/test-inter_results_compare_merge.R
tests/testthat/test-intra_results_merging.R
vignettes/CNVgears.Rmd
