Files in SinomeM/CNVgears
A Framework of Functions to Combine, Analize and Interpret CNVs Calling Results

DESCRIPTION
NAMESPACE
NEWS.md R/CNVRs_creation.R R/CNVgears-package.R R/CNVs_inheritance.R R/GRanges_from_to.R R/chr_st_end_centr_arms.R R/chr_uniform.R R/cnmops_to_CNVresults.R R/data_uniformation.R R/filter_calls.R R/genic_load_annotation.R R/immuno_regions.R R/inter_results_compare_merge.R R/internal_funtions.R R/intra_results_merging.R R/locus_annotator.R R/lrr_trio_plot.R R/read_NGS_intervals.R R/read_NGS_raw.R R/read_VCF.R R/read_final_report_raw.R R/read_final_report_snps.R R/read_metadt.R R/read_results.R R/summary_stats.R R/telom_centrom.R R/write_VCF.R README.md
data/hg18_chr_arms.rda
data/hg18_start_end_centromeres.rda
data/hg19_chr_arms.rda
data/hg19_start_end_centromeres.rda
data/hg38_chr_arms.rda
data/hg38_start_end_centromeres.rda
inst/CITATION
inst/extdata/NA12878.txt
inst/extdata/NA12891.txt
inst/extdata/NA12892.txt
inst/extdata/SNP.pfb
inst/extdata/chrs_14_22_cnvs_ipn.txt
inst/extdata/chrs_14_22_cnvs_penn.txt
inst/extdata/chrs_14_22_cnvs_quanti.txt
inst/extdata/cohort.ped
man/CNVgears.Rd man/CNVresults_to_GRanges.Rd man/chr_st_en_etc.Rd man/chr_uniform.Rd man/cleaning_filter.Rd man/cnvrs_create.Rd man/cnvs_inheritance.Rd man/dt_uniform.Rd man/genic_load.Rd man/genomic_locus.Rd man/immuno_regions.Rd man/inter_res_merge.Rd man/lrr_trio_plot.Rd man/merge_calls.Rd man/read_NGS_intervals.Rd man/read_NGS_raw.Rd man/read_finalreport_raw.Rd man/read_finalreport_snps.Rd man/read_metadt.Rd man/read_results.Rd man/read_vcf.Rd man/summary.CNVresults.Rd man/telom_centrom.Rd tests/testthat.R tests/testthat/test-inter_results_compare_merge.R tests/testthat/test-intra_results_merging.R vignettes/my-vignette.Rmd
SinomeM/CNVgears documentation built on Sept. 24, 2020, 5:41 p.m.