telom_centrom: Generate blacklist for telomeric and centromeric regions
In SinomeM/CNVgears: A Framework to Combine, Analize and Interpret CNVs Calling Results
Description
Usage
Arguments
Value
Examples
View source: R/telom_centrom.R
Description
Generate blacklist for telomeric and centromeric regions
Usage
1
telom_centrom(DT_in, telom = TRUE, centrom = TRUE, region = 50000)
Arguments
DT_in,
a data.table with start, and centromere position for
each chromosome. For the assemblies hg18, hg19 and hg38 this is provided in
the package.
telom,
logical, should be telomeric blacklist be produced?
centrom,
logical, should be centromeric blacklist be produced?
region,
integer. How many basepairs large should the regions be? The
centromeric region will be twice this large.
Value
, a data.table that can be passed to
cleaning_filter as blacklist.
Examples
1
SinomeM/CNVgears documentation built on Nov. 21, 2021, 5:34 a.m.
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Description Usage Arguments Value Examples
View source: R/telom_centrom.R
Description
Generate blacklist for telomeric and centromeric regions
Usage
1 | telom_centrom(DT_in, telom = TRUE, centrom = TRUE, region = 50000)
|
Arguments
DT_in, |
a |
telom, |
logical, should be telomeric blacklist be produced? |
centrom, |
logical, should be centromeric blacklist be produced? |
region, |
integer. How many basepairs large should the regions be? The centromeric region will be twice this large. |
Value
, a data.table that can be passed to
cleaning_filter as blacklist.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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