Files in Snitkin-Lab-Umich/prewas
Data Pre-Processing for Bacterial Genome-Wide Association Studies
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/collapse_snps_by_gene.R
R/data.R
R/dup_snps_in_overlapping_genes.R
R/format_inputs.R
R/generate_allele_matrix.R
R/preprocess_tree_and_vcf.R
R/prewas.R
R/reference_alleles.R
R/split_multiallelic_snps.R
R/validate.R
README.md
cran-comments.md
data/gff.rda
data/outgroup.rda
data/results.rda
data/snpeff_vcf.rda
data/tree.rda
data/vcf.rda
inst/CITATION
man/collapse_snps_into_genes.Rd
man/collapse_snps_into_genes_by_impact.Rd
man/gff.Rd
man/outgroup.Rd
man/prewas.Rd
man/results.Rd
man/snpeff_vcf.Rd
man/tree.Rd
man/vcf.Rd
prewas.Rproj
tests/.DS_Store
tests/testthat.R
tests/testthat/test-collapse_snps_by_gene.R
tests/testthat/test-dup_snps_in_overlapping_genes.R
tests/testthat/test-format_inputs.R
tests/testthat/test-generate_allele_matrix.R
tests/testthat/test-preprocess_tree_and_vcf.R
tests/testthat/test-prewas.R
tests/testthat/test-reference_alleles.R
tests/testthat/test-split_multiallelic_snps.R
tests/testthat/test-validate.R
vignettes/.gitignore
vignettes/Figure_1.png
vignettes/Figure_S1.png
vignettes/Figure_S3.png
vignettes/getting_started_with_prewas.Rmd
