NEWS.md

In Snitkin-Lab-Umich/prewas: Data Pre-Processing for Bacterial Genome-Wide Association Studies

prewas 1.0.0

• Added a NEWS.md file to track changes to the package.
• Initial CRAN submission

prewas 1.1.0

• Given updates to as.factor default behavior in R 4.0 code was changed to keep data correctly typed.
• New feature: prewas can now subset variants by SnpEff annotation.
• New feature: Added an optional flag, grp_nonref. Its value tells prewas whether keep all alleles at multiallelic sites separate or to collapse all non-reference alleles for multi-allelic sites.
• New feature: prewas can now handle bcftools-prepared indel vcf file and prepare these variants in the same manner as SNPs.

prewas 1.1.1

• Prewas was archived from CRAN because a dependency was archived from CRAN. The dependent package is now updated and therefore prewas can be on CRAN again.

Snitkin-Lab-Umich/prewas documentation built on April 23, 2023, 8:22 p.m.