Files in SomaLogic/SomaDataIO

Input/Output 'SomaScan' Data

.github/CONTRIBUTING.md .github/ISSUE_TEMPLATE/feature_template.md .github/ISSUE_TEMPLATE/issue_template.md .github/ISSUE_TEMPLATE/question_template.md .github/SUPPORT.md .github/pull_request_template.md LICENSE.md NEWS.md R/0-declare-global-variables.R R/Col.Meta-doc.R R/SeqId.R R/SomaDataIO-package.R R/adat-helpers.R R/adat2eSet.R R/addAttributes.R R/addClass.R R/calc_eLOD.R R/cleanNames.R R/convertColMeta.R R/data.R R/diffAdats.R R/dplyr-reexports.R R/dplyr-verbs.R R/genRowNames.R R/getAnalyteInfo.R R/getAnalytes.R R/getMeta.R R/getSomaScanLiftCCC.R R/getTargetNames.R R/groupGenerics.R R/is-intact-attr.R R/is-seqFormat.R R/lift-adat.R R/loadAdatsAsList.R R/matchSeqIds.R R/merge-clin.R R/params.R R/parseCheck.R R/parseHeader.R R/pivotExpressionSet.R R/prepHeaderMeta.R R/read-adat.R R/read-annotations.R R/rownames.R R/s3-merge-soma-adat.R R/s3-print-soma-adat.R R/s3-soma-adat.R R/s3-summary-soma-adat.R R/s3-transform.R R/scaleAnalytes.R R/syncColMeta.R R/tidyr-reexports.R R/tidyr-verbs.R R/utils-lift.R R/utils-pipe.R R/utils-read-adat.R R/utils-release.R R/utils.R R/write-adat.R R/z-deprecated.R R/zzz.R README.Rmd README.md SECURITY.md cran-comments.md data-raw/SomaScanObjects.R inst/check-pkg-versions.R inst/cli/merge/merge_clin.R man/Col.Meta.Rd man/SeqId.Rd man/SomaDataIO-deprecated.Rd man/SomaDataIO-package.Rd man/SomaScanObjects.Rd man/adat-helpers.Rd man/adat2eSet.Rd man/addAttributes.Rd man/addClass.Rd man/calc_eLOD.Rd man/cleanNames.Rd man/diffAdats.Rd man/getAnalyteInfo.Rd man/getAnalytes.Rd man/groupGenerics.Rd man/is_intact_attr.Rd man/is_seqFormat.Rd man/lift_adat.Rd man/loadAdatsAsList.Rd man/merge_clin.Rd man/params.Rd man/parseHeader.Rd man/pipe.Rd man/pivotExpressionSet.Rd man/read_adat.Rd man/read_annotations.Rd man/reexports.Rd man/rownames.Rd man/soma_adat.Rd man/transform.Rd man/write_adat.Rd tests/spelling.R tests/testthat.R tests/testthat/_snaps/S3-median.md tests/testthat/_snaps/S3-merge.md tests/testthat/_snaps/S3-print.md tests/testthat/_snaps/S3-summary.md tests/testthat/_snaps/diffAdats.md tests/testthat/_snaps/getTargetNames.md tests/testthat/_snaps/groupGenerics.md tests/testthat/_snaps/is-intact-attr.md tests/testthat/_snaps/loadAdatsAsList.md tests/testthat/_snaps/parseCheck.md tests/testthat/_snaps/parseHeader.md tests/testthat/_snaps/read-adat.md tests/testthat/_snaps/scaleAnalytes.md tests/testthat/_snaps/utils-read-adat.md tests/testthat/_snaps/utils-release.md tests/testthat/helper.R tests/testthat/test-S3-extract.R tests/testthat/test-S3-median.R tests/testthat/test-S3-merge.R tests/testthat/test-S3-print.R tests/testthat/test-S3-summary.R tests/testthat/test-S3-transform.R tests/testthat/test-SeqId.R tests/testthat/test-adat2eSet.R tests/testthat/test-addAttributes.R tests/testthat/test-addClass.R tests/testthat/test-calc_eLOD.R tests/testthat/test-checkADAT.R tests/testthat/test-diffAdats.R tests/testthat/test-dplyr-verbs.R tests/testthat/test-genRownames.R tests/testthat/test-getAdatVersion.R tests/testthat/test-getAnalyteInfo.R tests/testthat/test-getAnalytes.R tests/testthat/test-getMeta.R tests/testthat/test-getSeqIdMatches.R tests/testthat/test-getSomaScanLiftCCC.R tests/testthat/test-getSomaScanVersion.R tests/testthat/test-getTargetNames.R tests/testthat/test-groupGenerics.R tests/testthat/test-is-apt.R tests/testthat/test-is-intact-attr.R tests/testthat/test-is-seqFormat.R tests/testthat/test-lift-adat.R tests/testthat/test-loadAdatsAsList.R tests/testthat/test-locateSeqId.R tests/testthat/test-matchSeqIds.R tests/testthat/test-merge-clin.R tests/testthat/test-objects.R tests/testthat/test-parseCheck.R tests/testthat/test-parseHeader.R tests/testthat/test-pivotExpressionSet.R tests/testthat/test-prepHeaderMeta.R tests/testthat/test-read-adat.R tests/testthat/test-read-annotations.R tests/testthat/test-rownames.R tests/testthat/test-scaleAnalytes.R tests/testthat/test-syncColMeta.R tests/testthat/test-tidyr-verbs.R tests/testthat/test-utils-read-adat.R tests/testthat/test-utils-release.R tests/testthat/test-with-interactive.R tests/testthat/test-write-adat.R vignettes/SomaDataIO.Rmd vignettes/articles/cli-merge-tool.Rmd vignettes/articles/lifting-and-bridging.Rmd vignettes/articles/stat-binary-classification.Rmd vignettes/articles/stat-linear-regression.Rmd vignettes/articles/stat-three-group-analysis-anova.Rmd vignettes/articles/stat-two-group-comparison.Rmd vignettes/articles/tips-loading-and-wrangling.Rmd vignettes/articles/tips-safely-map-values.Rmd vignettes/articles/tips-safely-rename-df.Rmd vignettes/articles/tips-train-test-setup.Rmd